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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
245
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
38
ChIP-seq
27
DNase-seq
17
pCHi-C
10
RRBS
6
Hi-C
2
small RNA-seq
1
DNAme array
Assay category
434
Transcription
283
DNA accessibility
58
DNA methylation
38
DNA binding
6
3D chromatin structure
Target of assay
histone
221
histone modification
113
broad histone mark
108
narrow histone mark
32
control
9
RNA binding protein
9
transcription factor
1
chromatin remodeller
Date released
147
May, 2020
134
May, 2022
88
February, 2023
88
May, 2021
59
September, 2020
48
February, 2021
48
July, 2018
43
April, 2018
41
September, 2018
34
June, 2019
27
July, 2019
21
August, 2017
8
January, 2021
7
August, 2020
7
October, 2019
6
November, 2020
5
December, 2019
5
September, 2017
4
November, 2017
3
August, 2018
3
June, 2018
3
October, 2022
2
May, 2019
2
October, 2018
1
August, 2021
1
March, 2023
1
November, 2018
Available data
395
bam
372
bigWig
334
fastq
268
tsv
153
zippedFastqFolder
73
bed narrowPeak
56
bigBed narrowPeak
28
bed bed3+
28
bed broadPeak
28
bigBed broadPeak
10
bed bedMethyl
10
bigBed bedMethyl
4
hic
3
bedpe bed3+
3
cool
2
csv
2
hdf5
2
tagAlign
1
bed bed3
Organism
836
Homo sapiens
Biosample type
2067
tissue
836
primary cell
558
cell line
282
in vitro differentiated cells
8
stem cell
Organ
339
epithelium
288
pancreas
31
connective tissue
26
kidney
19
vasculature
18
brain
blood vessel
11
heart
11
liver
8
blood
8
bodily fluid
6
musculature of body
6
vein
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
391
AMP
324
HPAP
120
T1D
1
ITG
Genome assembly (visualization)
386
hg19
331
GRCh38
Lab
386
AMP-T2D consortium
324
Klaus Kaestner, Upenn
125
Kyle Gaulton, UCSD
1
ITG
Audit category:
37
inconsistent ontology term
30
audit script error
assay_title!
FAIRE-seq
target.investigated_as!
histone
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
836 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
ChIP-seq
DNase-seq
pCHi-C
RRBS
Hi-C
small RNA-seq
DNAme array
primary cell
pancreatic alpha cell
52
35
12
31
6
1
Langerhans cell
85
48
pancreatic beta cell
21
23
12
16
6
1
monocyte
54
15
1
1
exocrine cell
39
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