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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
16
DNase-seq
2
ChIP-seq
Assay category
16
DNA accessibility
2
DNA binding
Target of assay
histone
4
histone modification
2
RNA binding protein
2
broad histone mark
2
narrow histone mark
2
transcription factor
Date released
14
June, 2019
2
November, 2017
2
October, 2019
Available data
223
bam
210
bigWig
206
fastq
156
tsv
80
zippedFastqFolder
62
bed narrowPeak
46
bigBed narrowPeak
18
bed bed3+
18
bed broadPeak
18
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
6
hic
5
bedpe bed3+
3
cool
3
tagAlign
2
hdf5
Organism
18
Homo sapiens
Biosample type
18
primary cell
Organ
78
kidney
49
liver
36
limb
35
brain
33
musculature of body
30
heart
18
epithelium
18
ureter
13
vasculature
10
blood vessel
9
connective tissue
7
pancreas
4
artery
4
eye
2
adipose tissue
2
nerve
2
vein
1
spleen
Project
18
AMP
Genome assembly (visualization)
18
GRCh38
12
hg19
Lab
18
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_title!
FAIRE-seq
target.investigated_as!
histone
BIOSAMPLE
ASSAY
18 results
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DNase-seq
ChIP-seq
primary cell
brain microvascular endothelial cell
1
1
choroid plexus epithelial cell
1
1
endothelial cell of umbilical vein
2
glomerular visceral epithelial cell
2
kidney tubule cell
2
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