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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
DNase-seq
31
ChIP-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
FAIRE-seq
Assay category
36
DNA accessibility
31
DNA binding
24
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
histone
187
histone modification
117
narrow histone mark
70
broad histone mark
31
control
3
RNA binding protein
3
transcription factor
Date released
30
June, 2019
18
November, 2017
17
July, 2019
12
February, 2020
9
October, 2019
4
October, 2017
3
May, 2019
2
March, 2020
2
November, 2018
1
February, 2023
Available data
76
bam
55
bigWig
35
bed bed3+
35
bed broadPeak
35
bed narrowPeak
35
bigBed broadPeak
35
bigBed narrowPeak
26
tsv
19
tagAlign
11
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
Organism
98
Homo sapiens
Biosample type
80
tissue
18
primary cell
Organ
793
pancreas
689
liver
606
connective tissue
459
adipose tissue
430
epithelium
323
kidney
296
heart
164
vasculature
159
blood vessel
159
bone element
121
artery
98
brain
73
limb
68
blood
68
bodily fluid
63
musculature of body
58
eye
25
embryo
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
6
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
98
AMP
Genome assembly (visualization)
49
GRCh38
46
hg19
Lab
98
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_title!
FAIRE-seq
target.investigated_as!
histone
BIOSAMPLE
ASSAY
98 results
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DNase-seq
ChIP-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
tissue
brain
14
3
1
1
1
cerebellum (Hemisphere)
1
2
1
1
1
frontal cortex
2
2
1
caudate nucleus
1
2
1
temporal lobe
2
1
1
+ See 29 more…
primary cell
astrocyte of the cerebellum
1
2
1
brain microvascular endothelial cell
1
2
1
choroid plexus epithelial cell
1
2
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 2 more…
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