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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1490
ChIP-seq
1234
total RNA-seq
403
ATAC-seq
359
single cell RNA-seq
192
DNase-seq
85
RNA microarray
80
snATAC-seq
75
WGBS
25
Hi-C
18
small RNA-seq
10
RRBS
8
pCHi-C
4
FAIRE-seq
4
MeRIP-seq
2
snDrop-seq
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
192
DNA accessibility
Date released
172
June, 2019
10
October, 2019
9
November, 2018
1
August, 2017
Available data
189
bam
189
bed narrowPeak
189
bigBed narrowPeak
189
bigWig
188
bed bed3+
188
bed broadPeak
188
bigBed broadPeak
9
fastq
Organism
192
Homo sapiens
Biosample type
177
tissue
13
primary cell
2
cell line
Organ
77
kidney
36
limb
32
musculature of body
29
heart
27
brain
18
ureter
11
epithelium
8
blood vessel
8
vasculature
7
pancreas
5
connective tissue
5
liver
4
artery
3
eye
2
adipose tissue
2
nerve
2
vein
1
spleen
Project
192
AMP
Genome assembly (visualization)
189
GRCh38
166
hg19
Lab
192
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_title!
GRO-seq
replicates.library.biosample.life_stage!
unknown
BIOSAMPLE
ASSAY
192 results
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Clear Filters
DNase-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 39 more…
primary cell
kidney tubule cell
3
cardiac fibroblast
2
endothelial cell of umbilical vein
2
glomerular visceral epithelial cell
2
kidney glomerular epithelial cell
2
+ See 2 more…
cell line
Panc1
1
glomerular visceral epithelial cell
1
See all biosamples
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