Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
181
ChIP-seq
114
total RNA-seq
38
ATAC-seq
5
pCHi-C
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
181
DNA binding
116
Transcription
39
DNA accessibility
4
3D chromatin structure
Target of assay
105
histone
105
histone modification
53
narrow histone mark
51
broad histone mark
39
transcription factor
37
control
11
RNA binding protein
1
chromatin remodeller
Date released
132
May, 2021
62
August, 2017
42
August, 2021
37
February, 2018
34
December, 2017
February, 2021
16
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
2
December, 2019
1
August, 2018
Available data
252
bam
216
bigWig
120
fastq
115
bed narrowPeak
109
tsv
40
tagAlign
17
bed bed3+
17
bigBed narrowPeak
7
bedpe bed3+
5
bed bed3
4
hic
3
bed bedgraph
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
347
Homo sapiens
Biosample type
2226
tissue
1035
primary cell
540
cell line
347
in vitro differentiated cells
7
stem cell
Organ
83
connective tissue
25
embryo
23
epithelium
15
liver
3
pancreas
1
adipose tissue
1
heart
Project
347
AMP
Genome assembly (visualization)
254
hg19
226
GRCh38
Lab
293
AMP-T2D consortium
47
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
96
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
inconsistent control read length
assay_title!
GRO-seq
month_released!
February, 2021
audit.WARNING.category!
inconsistent control read length
BIOSAMPLE
ASSAY
347 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
Hi-C
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
61
1
4
1
1
cardiomyocytes
3
59
embryonic stem cell
40
7
6
1
neural progenitor cell
21
7
10
pancreatic endoderm
16
4
+ See 31 more…
See all biosamples
Download