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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
191
ChIP-seq
45
total RNA-seq
23
ATAC-seq
GRO-seq
2
Capture-C
2
pCHi-C
1
DNase-seq
Assay category
191
DNA binding
45
Transcription
24
DNA accessibility
Target of assay
110
histone
110
histone modification
56
broad histone mark
53
narrow histone mark
46
transcription factor
35
control
11
RNA binding protein
3
chromatin remodeller
Date released
68
August, 2017
64
May, 2021
42
August, 2021
39
December, 2017
39
February, 2018
February, 2023
8
February, 2021
2
October, 2019
1
August, 2018
1
March, 2020
Available data
190
bam
160
bigWig
133
fastq
118
bed narrowPeak
41
tsv
37
tagAlign
21
bed bed3+
17
bigBed narrowPeak
4
bed bedgraph
1
bed broadPeak
1
bedpe bed3+
1
bigBed broadPeak
Organism
264
Homo sapiens
Biosample type
2591
tissue
952
primary cell
564
cell line
264
in vitro differentiated cells
8
stem cell
Organ
84
connective tissue
22
embryo
19
epithelium
15
liver
3
pancreas
1
adipose tissue
1
heart
Project
264
AMP
Genome assembly (visualization)
180
hg19
166
GRCh38
Lab
213
AMP-T2D consortium
47
Kyle Gaulton, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
16
inconsistent control read length
assay_title!
GRO-seq
month_released!
February, 2023
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
264 results
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ChIP-seq
total RNA-seq
ATAC-seq
Capture-C
pCHi-C
DNase-seq
in vitro differentiated cells
adipocyte
67
4
7
1
1
embryonic stem cell
40
7
5
1
neural progenitor cell
21
7
10
pancreatic endoderm
18
4
hepatocyte
15
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