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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
95
ATAC-seq
72
total RNA-seq
47
WGBS
8
Hi-C
6
MeRIP-seq
6
RRBS
4
pCHi-C
2
Capture-C
2
ChIP-seq
2
DNase-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
RNA microarray
Assay category
97
DNA accessibility
72
Transcription
53
DNA methylation
8
3D chromatin structure
2
DNA binding
Target of assay
3
control
3
nucleotide modification
2
histone
2
histone modification
2
narrow histone mark
Date released
80
May, 2022
69
February, 2023
24
October, 2019
19
September, 2020
16
May, 2021
8
July, 2019
7
August, 2020
6
February, 2021
6
November, 2020
3
March, 2020
3
October, 2022
2
August, 2021
1
December, 2019
1
February, 2020
1
November, 2019
Available data
bam
304
bigWig
257
fastq
169
bed narrowPeak
159
tsv
80
zippedFastqFolder
79
bigBed narrowPeak
25
bed broadPeak
25
bigBed broadPeak
24
bed bed3+
7
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
6
hic
5
bedpe bed3+
3
cool
2
hdf5
1
tar
Organism
245
Homo sapiens
Biosample type
164
primary cell
54
tissue
28
cell line
Organ
257
pancreas
210
kidney
207
epithelium
182
heart
110
liver
93
bone element
91
connective tissue
54
eye
51
vasculature
50
blood vessel
49
adipose tissue
43
brain
39
artery
39
musculature of body
20
lung
9
blood
9
bodily fluid
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
152
HPAP
94
AMP
Genome assembly (visualization)
43
hg19
10
GRCh38
Lab
152
Klaus Kaestner, Upenn
88
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
28
inconsistent ontology term
5
audit script error
assay_title!
GRO-seq
files.file_type!
bam
BIOSAMPLE
ASSAY
246 results
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Clear Filters
ATAC-seq
total RNA-seq
WGBS
Hi-C
MeRIP-seq
RRBS
pCHi-C
Capture-C
ChIP-seq
DNase-seq
CRISPR genome editing followed by sgRNA sequencing
RNA microarray
primary cell
pancreatic alpha cell
29
42
31
1
pancreatic beta cell
16
11
16
1
pancreatic acinar cell
4
1
endothelial cell of umbilical vein
2
brain microvascular endothelial cell
1
+ See 9 more…
tissue
islet of Langerhans
1
14
4
2
retina
15
3
pigmented layer of retina
12
2
renal glomerulus
1
cell line
EndoC_BH1
18
1
6
2
1
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