Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
25
ATAC-seq
19
ChIP-seq
9
total RNA-seq
5
pCHi-C
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
Assay category
25
DNA accessibility
19
DNA binding
11
Transcription
4
3D chromatin structure
Target of assay
33
histone
histone modification
19
broad histone mark
14
narrow histone mark
12
transcription factor
7
control
5
RNA binding protein
Date released
27
May, 2021
16
February, 2023
6
March, 2020
4
August, 2021
4
February, 2021
4
October, 2019
2
August, 2017
2
December, 2019
1
August, 2018
Available data
bam
177
bigWig
131
tsv
72
fastq
54
bed narrowPeak
17
bed bed3+
14
tagAlign
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
5
bigBed narrowPeak
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
66
Homo sapiens
Biosample type
708
tissue
445
primary cell
77
cell line
66
in vitro differentiated cells
6
stem cell
Organ
26
connective tissue
1
adipose tissue
Project
66
AMP
Genome assembly (visualization)
33
hg19
Lab
32
AMP-T2D consortium
27
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
14
inconsistent ontology term
2
audit script error
assay_title!
GRO-seq
files.file_type!
bam
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
66 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
ChIP-seq
total RNA-seq
pCHi-C
Hi-C
Capture-C
single cell RNA-seq
in vitro differentiated cells
embryonic stem cell
6
17
5
1
adipocyte
8
2
1
1
cardiomyocytes (cardiac muscle cell)
2
2
2
chondrocyte
5
immature adipocyte
2
2
+ See 7 more…
See all biosamples
Download