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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
5
ChIP-seq
4
WGBS
3
ATAC-seq
3
total RNA-seq
2
pCHi-C
1
RNA microarray
Assay category
5
DNA binding
4
DNA methylation
3
DNA accessibility
3
Transcription
Target of assay
31
histone
histone modification
20
broad histone mark
11
narrow histone mark
5
control
Date released
9
August, 2017
2
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
March, 2020
1
May, 2023
1
October, 2019
Available data
bam
423
bigWig
401
tsv
43
fastq
11
bed narrowPeak
9
bigBed narrowPeak
6
bed bed3+
2
bed bedMethyl
2
bed broadPeak
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
1
tagAlign
Organism
17
Homo sapiens
Biosample type
17
tissue
1
in vitro differentiated cells
Organ
243
pancreas
210
kidney
207
epithelium
146
heart
93
bone element
87
liver
52
eye
51
vasculature
50
blood vessel
47
connective tissue
39
artery
22
brain
20
lung
20
musculature of body
18
adipose tissue
9
blood
9
bodily fluid
8
skeleton
7
limb
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
18
AMP
Genome assembly (visualization)
4
hg19
1
GRCh38
Lab
18
AMP-T2D consortium
assay_title!
GRO-seq
files.file_type!
bam
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
18 results
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Clear Filters
ChIP-seq
WGBS
ATAC-seq
total RNA-seq
pCHi-C
RNA microarray
tissue
subcutaneous abdominal adipose tissue
5
3
adipose tissue
1
3
1
1
subcutaneous adipose tissue
1
1
omental fat pad
1
in vitro differentiated cells
white fat cell
1
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