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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
92
total RNA-seq
36
single cell RNA-seq
27
snATAC-seq
ATAC-seq
8
WGBS
GRO-seq
4
RRBS
2
ChIP-seq
1
Hi-C
1
pCHi-C
Assay category
128
Transcription
27
DNA accessibility
12
DNA methylation
2
DNA binding
1
3D chromatin structure
Target of assay
1
broad histone mark
1
histone
1
histone modification
1
transcription factor
Date released
76
February, 2023
45
February, 2021
38
September, 2020
6
August, 2017
1
August, 2018
1
December, 2018
1
November, 2017
1
November, 2018
1
October, 2017
1
September, 2018
Available data
bam
3028
bigWig
1586
tsv
1539
bed narrowPeak
1292
fastq
1015
bigBed narrowPeak
398
tagAlign
320
bed broadPeak
285
bigBed broadPeak
269
bed bed3+
158
txt
114
zippedFastqFolder
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
8
csv
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
171
Homo sapiens
Biosample type
162
primary cell
6
tissue
2
cell line
1
in vitro differentiated cells
Organ
59
epithelium
59
pancreas
4
liver
2
adipose tissue
2
connective tissue
2
musculature of body
1
brain
Project
159
HPAP
12
AMP
Genome assembly (visualization)
4
hg19
Lab
159
Klaus Kaestner, Upenn
12
AMP-T2D consortium
Audit category:
27
audit script error
Audit category:
1
missing controlled_by
assay_title!
GRO-seq
ATAC-seq
files.file_type!
bam
BIOSAMPLE
ASSAY
171 results
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Clear Filters
total RNA-seq
single cell RNA-seq
snATAC-seq
WGBS
RRBS
ChIP-seq
Hi-C
pCHi-C
primary cell
Langerhans cell
34
27
pancreatic alpha cell
42
6
exocrine cell
39
pancreatic beta cell
11
pancreatic cell
2
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tissue
liver
1
1
skeletal muscle tissue
2
adipose tissue
1
brain
1
cell line
HepG2
1
1
in vitro differentiated cells
white fat cell
1
See all biosamples
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