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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
117
ChIP-seq
15
total RNA-seq
GRO-seq
1
DNase-seq
1
pCHi-C
Assay category
117
DNA binding
15
Transcription
1
DNA accessibility
Target of assay
65
histone
65
histone modification
33
narrow histone mark
33
transcription factor
31
broad histone mark
22
control
6
RNA binding protein
chromatin remodeller
Date released
52
August, 2017
42
December, 2017
39
February, 2018
1
August, 2018
Available data
288
bam
252
bigWig
134
fastq
131
tsv
129
bed narrowPeak
40
tagAlign
25
bed bed3+
16
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
134
Homo sapiens
Biosample type
408
primary cell
397
cell line
375
tissue
134
in vitro differentiated cells
3
stem cell
Organ
53
connective tissue
26
embryo
18
epithelium
14
liver
1
adipose tissue
Project
134
AMP
Genome assembly (visualization)
115
GRCh38
115
hg19
Lab
134
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
6
missing controlled_by
Audit category:
15
inconsistent control read length
assay_title!
GRO-seq
target.investigated_as!
chromatin remodeller
BIOSAMPLE
ASSAY
134 results
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ChIP-seq
total RNA-seq
DNase-seq
pCHi-C
in vitro differentiated cells
adipocyte
51
1
pancreatic endoderm
18
4
hepatocyte
14
definitive endodermal cell
8
2
primitive gut cell
8
2
Posterior foregut
5
embryonic stem cell
3
2
endocrine cell
3
2
posterior foregut
3
2
Hepatic endoderm
4
islet precursor cell
1
white fat cell
1
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