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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1007
total RNA-seq
707
ChIP-seq
208
ATAC-seq
178
single cell RNA-seq
172
DNase-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
21
pCHi-C
16
small RNA-seq
15
Hi-C
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1201
Transcription
707
DNA binding
412
DNA accessibility
38
DNA methylation
15
3D chromatin structure
Target of assay
458
histone modification
457
histone
264
broad histone mark
193
narrow histone mark
158
control
93
transcription factor
27
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
284
August, 2017
227
August, 2021
October, 2019
193
May, 2020
161
June, 2019
120
July, 2018
110
May, 2019
82
November, 2017
80
April, 2019
76
July, 2019
74
October, 2018
66
May, 2022
60
February, 2023
48
December, 2017
47
September, 2023
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
26
November, 2018
23
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1713
bam
1606
bigWig
1064
tsv
792
bed narrowPeak
509
bigBed narrowPeak
377
fastq
207
bed broadPeak
199
bed bed3+
189
tagAlign
170
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
10
hic
9
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
Organism
2479
Homo sapiens
Biosample type
2488
tissue
1052
primary cell
566
cell line
382
in vitro differentiated cells
9
stem cell
Organ
545
connective tissue
502
pancreas
487
adipose tissue
355
liver
305
heart
295
kidney
179
brain
158
bone element
107
blood vessel
107
vasculature
82
musculature of body
53
limb
artery
35
eye
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
nerve
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2391
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1657
GRCh38
1586
hg19
Lab
2136
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
89
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
GRO-seq
month_released!
October, 2019
organ_slims!
artery
BIOSAMPLE
ASSAY
2488 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
small RNA-seq
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
278
50
55
6
1
7
3
1
1
4
adipose tissue
382
2
2
3
1
liver
166
140
20
1
2
3
1
1
1
1
kidney
49
23
75
64
13
6
1
1
1
bone element
84
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