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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1309
total RNA-seq
1082
ChIP-seq
487
ATAC-seq
368
single cell RNA-seq
196
DNase-seq
87
RNA microarray
84
snATAC-seq
70
WGBS
50
pCHi-C
25
Hi-C
19
RRBS
15
small RNA-seq
10
MeRIP-seq
GRO-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
STARR-seq
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
196
DNA accessibility
Date released
185
June, 2019
October, 2019
6
November, 2018
4
August, 2017
1
November, 2020
Available data
196
bam
196
bed narrowPeak
196
bigBed narrowPeak
196
bigWig
194
bed broadPeak
194
bigBed broadPeak
192
bed bed3+
9
fastq
Organism
196
Homo sapiens
Biosample type
170
tissue
25
primary cell
1
in vitro differentiated cells
Organ
78
kidney
33
musculature of body
32
brain
32
limb
30
heart
18
ureter
14
epithelium
9
connective tissue
7
pancreas
7
vasculature
liver
5
blood vessel
4
eye
2
adipose tissue
2
artery
1
spleen
Project
196
AMP
Genome assembly (visualization)
194
GRCh38
173
hg19
Lab
196
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
assay_title!
GRO-seq
month_released!
October, 2019
organ_slims!
liver
BIOSAMPLE
ASSAY
196 results
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Clear Filters
DNase-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 36 more…
primary cell
cardiac fibroblast
3
glomerular visceral epithelial cell
2
kidney tubule cell
2
skeletal muscle myoblast
2
astrocyte of the cerebellum
1
+ See 15 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
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