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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1653
ChIP-seq
1130
total RNA-seq
379
ATAC-seq
289
single cell RNA-seq
204
DNase-seq
87
RNA microarray
73
snATAC-seq
56
pCHi-C
25
Hi-C
24
WGBS
19
RRBS
16
small RNA-seq
GRO-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
FAIRE-seq
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
19
DNA methylation
Date released
13
July, 2019
6
August, 2017
5
August, 2021
Available data
17
bed bedMethyl
17
bigBed bedMethyl
4
fastq
Organism
24
Homo sapiens
Biosample type
10
primary cell
9
tissue
5
cell line
Organ
6
epithelium
6
kidney
5
musculature of body
4
liver
2
brain
2
heart
pancreas
1
connective tissue
1
eye
1
pericardium
1
vasculature
Project
24
AMP
Genome assembly (visualization)
17
hg19
Lab
19
AMP-T2D consortium
5
Bing Ren, UCSD
Audit category:
3
inconsistent ontology term
assay_title!
GRO-seq
organ_slims!
pancreas
BIOSAMPLE
ASSAY
24 results
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RRBS
STARR-seq
primary cell
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
epithelial cell of proximal tubule
1
hepatocyte
1
+ See 5 more…
tissue
skeletal muscle tissue
4
brain
1
heart left ventricle
1
kidney
1
liver
1
+ See 1 more…
cell line
HEK293T
2
HepG2
2
Synthesized DNA
1
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