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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
60
total RNA-seq
57
ATAC-seq
34
ChIP-seq
4
DNase-seq
2
single cell RNA-seq
Assay category
62
Transcription
61
DNA accessibility
34
DNA binding
Target of assay
20
histone
20
histone modification
14
broad histone mark
9
control
6
narrow histone mark
5
transcription factor
1
RNA binding protein
Date released
74
February, 2021
43
February, 2023
26
October, 2019
5
May, 2019
3
July, 2019
2
August, 2021
2
February, 2020
2
June, 2019
Available data
110
bam
85
bigWig
82
bed narrowPeak
58
tsv
25
bigBed narrowPeak
6
tagAlign
4
bed bed3
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
4
txt
Organism
157
Homo sapiens
Biosample type
89
tissue
66
cell line
2
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
36
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
157
AMP
Genome assembly (visualization)
136
GRCh38
105
hg19
Lab
157
AMP-T2D consortium
assay_title!
GRO-seq
organ_slims!
adrenal gland
BIOSAMPLE
ASSAY
157 results
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total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
single cell RNA-seq
tissue
coronary artery
1
36
5
2
tibial artery
1
1
23
2
acetabular part of hip bone
1
1
ilium
1
1
ischium
1
1
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cell line
smooth muscle cell of the coronary artery
52
8
6
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
See all biosamples
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