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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
ChIP-seq
10
total RNA-seq
5
STARR-seq
Hi-C
ATAC-seq
1
whole genome sequencing assay
Assay category
18
DNA binding
10
Transcription
1
DNA sequencing
Target of assay
11
transcription factor
4
control
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
34
August, 2021
Available data
14
bed narrowPeak
14
bigWig
10
tsv
1
vcf
Organism
34
Homo sapiens
Biosample type
33
cell line
1
tissue
Organ
30
liver
2
kidney
1
pancreas
Project
34
AMP
Genome assembly (visualization)
14
hg19
Lab
3543
AMP-T2D consortium
309
Kyle Gaulton, UCSD
272
Klaus Kaestner, Upenn
66
Katalin Susztak, Upenn
47
KPMP
34
Bing Ren, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Anna Gloyn, Oxford
2
Struan F.A. Grant, CHOP
Audit category:
1
inconsistent ontology term
assay_title!
Hi-C
ATAC-seq
BIOSAMPLE
ASSAY
34 results
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ChIP-seq
total RNA-seq
STARR-seq
whole genome sequencing assay
cell line
HepG2
18
9
2
1
HEK293T
2
Synthesized DNA
1
tissue
islet of Langerhans
1
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