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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
191
total RNA-seq
141
single cell RNA-seq
86
ChIP-seq
76
snATAC-seq
60
ATAC-seq
47
WGBS
16
pCHi-C
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
336
Transcription
136
DNA accessibility
86
DNA binding
47
DNA methylation
Target of assay
86
histone
86
histone modification
44
broad histone mark
42
narrow histone mark
Date released
151
May, 2021
134
May, 2022
99
February, 2023
59
September, 2020
47
September, 2023
45
February, 2021
41
May, 2020
19
April, 2020
16
January, 2021
7
August, 2020
4
March, 2020
4
March, 2023
Available data
188
bigWig
178
bam
169
fastq
153
zippedFastqFolder
98
tsv
86
bed narrowPeak
84
tagAlign
Organism
621
Homo sapiens
Biosample type
520
primary cell
97
tissue
7
cell line
2
stem cell
Organ
179
pancreas
149
epithelium
47
kidney
19
lung
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
321
HPAP
235
T1D
47
KPMP
19
LungMap
4
community
Genome assembly (visualization)
188
GRCh38
178
hg19
Lab
321
Klaus Kaestner, Upenn
231
Kyle Gaulton, UCSD
47
KPMP
19
Xin Sun, UCSD
4
AMP-T2D consortium
4
Anna Gloyn, Oxford
Audit category:
27
audit script error
inconsistent ontology term
assay_title!
Hi-C
award.project!
AMP
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
626 results
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Clear Filters
total RNA-seq
single cell RNA-seq
ChIP-seq
snATAC-seq
ATAC-seq
WGBS
pCHi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
monocyte
53
84
1
Langerhans cell
85
48
pancreatic alpha cell
42
29
31
pancreatic beta cell
11
16
16
exocrine cell
39
+ See 34 more…
tissue
kidney
47
islet of Langerhans
7
2
6
11
lung
9
10
pancreas
4
thymus
1
cell line
EndoC_BH1
3
2
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
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