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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
total RNA-seq
86
ChIP-seq
85
single cell RNA-seq
56
snATAC-seq
49
ATAC-seq
47
WGBS
16
pCHi-C
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
279
Transcription
105
DNA accessibility
86
DNA binding
47
DNA methylation
Target of assay
86
histone
86
histone modification
44
broad histone mark
42
narrow histone mark
Date released
152
May, 2021
134
May, 2022
81
February, 2023
59
September, 2020
45
February, 2021
45
May, 2020
8
January, 2021
7
August, 2020
4
March, 2023
3
March, 2020
Available data
194
bigWig
184
bam
169
fastq
153
zippedFastqFolder
104
tsv
86
bed narrowPeak
84
tagAlign
Organism
534
Homo sapiens
Biosample type
525
primary cell
tissue
11
cell line
2
stem cell
Organ
153
epithelium
153
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
Project
AMP
321
HPAP
213
T1D
4
community
Genome assembly (visualization)
194
GRCh38
184
hg19
Lab
321
Klaus Kaestner, Upenn
209
Kyle Gaulton, UCSD
4
AMP-T2D consortium
4
Anna Gloyn, Oxford
Audit category:
27
audit script error
9
inconsistent ontology term
assay_title!
Hi-C
award.project!
AMP
biosample_type!
tissue
BIOSAMPLE
ASSAY
538 results
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Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
snATAC-seq
ATAC-seq
WGBS
pCHi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
monocyte
53
84
1
Langerhans cell
85
48
pancreatic alpha cell
42
29
31
pancreatic beta cell
11
16
16
exocrine cell
39
+ See 36 more…
cell line
EndoC_BH1
2
2
3
2
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
See all biosamples
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