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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
277
ChIP-seq
231
total RNA-seq
197
ATAC-seq
147
single cell RNA-seq
56
snATAC-seq
47
WGBS
31
DNase-seq
17
pCHi-C
Hi-C
10
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
380
Transcription
285
DNA accessibility
277
DNA binding
58
DNA methylation
Target of assay
235
histone
235
histone modification
121
broad histone mark
114
narrow histone mark
35
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
September, 2020
57
August, 2017
55
June, 2019
48
February, 2021
48
July, 2018
43
April, 2018
33
October, 2019
27
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
2
October, 2018
1
November, 2018
Available data
607
bam
604
bigWig
366
fastq
293
bed narrowPeak
270
tsv
134
zippedFastqFolder
107
bigBed narrowPeak
99
tagAlign
48
bed broadPeak
48
bigBed broadPeak
33
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
2
csv
1
bed bed3
1
tar
Organism
1017
Homo sapiens
Biosample type
2760
tissue
1017
primary cell
658
cell line
390
in vitro differentiated cells
10
stem cell
Organ
380
epithelium
324
pancreas
38
connective tissue
36
kidney
33
vasculature
27
blood vessel
20
vein
18
brain
14
musculature of body
13
heart
13
liver
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
551
AMP
262
HPAP
204
T1D
Genome assembly (visualization)
617
hg19
530
GRCh38
Lab
516
AMP-T2D consortium
262
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
Audit category:
54
inconsistent ontology term
27
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
inconsistent assembly
1
inconsistent control run_type
assay_title!
Hi-C
audit.WARNING.category!
inconsistent assembly
month_released!
September, 2020
BIOSAMPLE
ASSAY
1017 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
37
33
12
31
Langerhans cell
45
48
pancreatic beta cell
13
20
22
12
16
CD8-positive, alpha-beta T cell
33
4
2
1
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