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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
763
ChIP-seq
360
total RNA-seq
229
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
48
WGBS
33
DNase-seq
23
pCHi-C
Hi-C
10
RRBS
6
MeRIP-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
HiChIP
2
small RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
DNAme array
1
FAIRE-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
763
DNA binding
551
Transcription
319
DNA accessibility
59
DNA methylation
1
DNA sequencing
Target of assay
371
transcription factor
275
histone
275
histone modification
141
broad histone mark
134
narrow histone mark
118
control
89
recombinant protein
75
RNA binding protein
31
chromatin remodeller
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
324
November, 2017
227
May, 2021
148
May, 2020
144
February, 2021
134
May, 2022
94
February, 2023
73
September, 2018
62
November, 2018
62
October, 2019
59
August, 2017
59
September, 2020
55
June, 2019
48
July, 2018
47
August, 2021
43
April, 2018
27
December, 2018
27
July, 2019
23
January, 2019
15
November, 2019
12
November, 2020
11
March, 2020
8
January, 2021
7
August, 2020
5
December, 2019
5
May, 2019
5
September, 2017
3
August, 2018
3
June, 2018
2
March, 2023
2
October, 2018
1
January, 2018
1
October, 2022
Available data
1191
bam
1130
bigWig
835
fastq
699
bed narrowPeak
464
bigBed narrowPeak
389
tsv
153
zippedFastqFolder
120
tagAlign
108
bed broadPeak
108
bigBed broadPeak
35
bed bed3+
11
bed bedMethyl
11
bigBed bedMethyl
4
tar
2
bed bed3
2
csv
1
txt
1
vcf
Organism
1732
Homo sapiens
Biosample type
2721
tissue
1078
primary cell
658
cell line
390
in vitro differentiated cells
10
stem cell
Organ
477
epithelium
433
pancreas
412
liver
99
vasculature
93
blood vessel
79
heart
69
blood
69
bodily fluid
68
artery
55
kidney
38
connective tissue
20
vein
18
brain
14
musculature of body
8
embryo
5
eye
2
adipose tissue
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
Project
1200
AMP
321
HPAP
213
T1D
2
community
Genome assembly (visualization)
1146
hg19
998
GRCh38
Lab
1130
AMP-T2D consortium
321
Klaus Kaestner, Upenn
244
Kyle Gaulton, UCSD
33
Bing Ren, UCSD
6
Rohit N. Kulkarni, M.D., Ph.D.
2
Anna Gloyn, Oxford
Audit category:
145
inconsistent ontology term
27
audit script error
1
inconsistent control
1
inconsistent replicate
Audit category:
57
missing controlled_by
Audit category:
31
inconsistent control read length
9
inconsistent control run_type
2
inconsistent assembly
assay_title!
Hi-C
BIOSAMPLE
ASSAY
1736 results
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table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
RRBS
MeRIP-seq
STARR-seq
CRISPR genome editing followed by DNA sequencing
Capture-C
HiChIP
small RNA-seq
CRISPR genome editing followed by sgRNA sequencing
DNAme array
FAIRE-seq
MPRA
shRNA RNA-seq
...and 2 more
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
35
12
31
Langerhans cell
85
48
pancreatic beta cell
13
21
23
12
16
CD8-positive, alpha-beta T cell
33
4
2
1
+ See 92 more…
cell line
HepG2
378
14
1
1
2
2
EndoC_BH1
15
33
19
6
3
2
2
1
smooth muscle cell of the coronary artery
6
52
8
GM12878
60
1
Panc1
13
1
+ See 14 more…
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