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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
total RNA-seq
ATAC-seq
187
single cell RNA-seq
179
ChIP-seq
56
snATAC-seq
47
WGBS
31
DNase-seq
17
pCHi-C
Hi-C
10
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
436
Transcription
179
DNA binding
88
DNA accessibility
58
DNA methylation
Target of assay
139
histone
139
histone modification
71
broad histone mark
68
narrow histone mark
33
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
109
May, 2021
95
May, 2022
76
February, 2023
59
September, 2018
56
September, 2020
55
June, 2019
48
July, 2018
47
February, 2021
47
May, 2020
44
August, 2017
43
April, 2018
31
October, 2019
27
July, 2019
9
November, 2017
8
January, 2021
5
December, 2019
5
May, 2019
5
November, 2020
3
August, 2018
3
June, 2018
2
October, 2018
1
November, 2018
Available data
531
bigWig
525
bam
377
fastq
258
tsv
256
bed narrowPeak
114
zippedFastqFolder
tagAlign
87
bigBed narrowPeak
49
bed broadPeak
49
bigBed broadPeak
33
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
2
csv
1
tar
Organism
778
Homo sapiens
Biosample type
2263
tissue
778
primary cell
609
cell line
308
in vitro differentiated cells
10
stem cell
Organ
323
epithelium
272
pancreas
36
connective tissue
36
kidney
33
vasculature
27
blood vessel
20
vein
18
brain
14
musculature of body
13
heart
8
blood
8
bodily fluid
8
liver
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
386
AMP
272
HPAP
120
T1D
Genome assembly (visualization)
436
hg19
388
GRCh38
Lab
351
AMP-T2D consortium
272
Klaus Kaestner, Upenn
155
Kyle Gaulton, UCSD
Audit category:
42
inconsistent ontology term
27
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
assay_title!
Hi-C
ATAC-seq
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
778 results
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total RNA-seq
single cell RNA-seq
ChIP-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
Langerhans cell
85
48
pancreatic alpha cell
52
12
13
31
pancreatic beta cell
21
12
13
16
monocyte
54
1
1
1
exocrine cell
39
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