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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
107
single cell RNA-seq
105
total RNA-seq
50
ATAC-seq
49
snATAC-seq
41
WGBS
17
pCHi-C
4
ChIP-seq
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
216
Transcription
99
DNA accessibility
41
DNA methylation
4
DNA binding
Target of assay
4
histone
4
histone modification
4
narrow histone mark
Date released
134
May, 2022
69
May, 2021
47
September, 2023
45
May, 2020
23
February, 2023
19
April, 2020
18
September, 2020
16
January, 2021
7
March, 2020
4
March, 2023
Available data
196
bigWig
186
bam
fastq
153
zippedFastqFolder
104
tsv
88
bed narrowPeak
tagAlign
Organism
377
Homo sapiens
Biosample type
272
primary cell
97
tissue
11
cell line
2
stem cell
Organ
114
pancreas
84
epithelium
47
kidney
19
lung
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
160
T1D
152
HPAP
47
KPMP
19
LungMap
4
community
Genome assembly (visualization)
102
GRCh38
102
hg19
Lab
152
Klaus Kaestner, Upenn
152
Kyle Gaulton, UCSD
47
KPMP
19
Xin Sun, UCSD
8
AMP-T2D consortium
4
Anna Gloyn, Oxford
Audit category:
9
inconsistent ontology term
assay_title!
Hi-C
files.file_type!
tagAlign
fastq
award.project!
AMP
BIOSAMPLE
ASSAY
382 results
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single cell RNA-seq
total RNA-seq
ATAC-seq
snATAC-seq
WGBS
pCHi-C
ChIP-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
Langerhans cell
51
21
monocyte
53
1
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
peripheral blood mononuclear cell
8
+ See 35 more…
tissue
kidney
47
islet of Langerhans
7
11
6
2
lung
9
10
pancreas
4
thymus
1
cell line
EndoC_BH1
2
2
3
2
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
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