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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
197
total RNA-seq
89
single cell RNA-seq
55
snATAC-seq
21
ATAC-seq
17
pCHi-C
6
WGBS
4
ChIP-seq
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
290
Transcription
76
DNA accessibility
6
DNA methylation
4
DNA binding
Target of assay
4
histone
4
histone modification
4
narrow histone mark
Date released
99
February, 2023
69
May, 2021
47
September, 2023
45
February, 2021
45
May, 2020
40
September, 2020
19
April, 2020
16
January, 2021
7
August, 2020
7
March, 2020
4
March, 2023
Available data
196
bigWig
186
bam
169
fastq
zippedFastqFolder
104
tsv
88
bed narrowPeak
tagAlign
Organism
393
Homo sapiens
Biosample type
288
primary cell
97
tissue
11
cell line
2
stem cell
Organ
103
pancreas
73
epithelium
47
kidney
19
lung
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
168
HPAP
160
T1D
47
KPMP
19
LungMap
4
community
Genome assembly (visualization)
112
GRCh38
102
hg19
Lab
168
Klaus Kaestner, Upenn
152
Kyle Gaulton, UCSD
47
KPMP
19
Xin Sun, UCSD
8
AMP-T2D consortium
4
Anna Gloyn, Oxford
Audit category:
27
audit script error
9
inconsistent ontology term
assay_title!
Hi-C
files.file_type!
tagAlign
zippedFastqFolder
award.project!
AMP
BIOSAMPLE
ASSAY
398 results
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total RNA-seq
single cell RNA-seq
snATAC-seq
ATAC-seq
pCHi-C
WGBS
ChIP-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
Langerhans cell
33
27
pancreatic alpha cell
42
7
6
monocyte
53
1
exocrine cell
39
pancreatic beta cell
11
3
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tissue
kidney
47
islet of Langerhans
7
6
11
2
lung
9
10
pancreas
4
thymus
1
cell line
EndoC_BH1
2
2
3
2
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
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