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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
45
ATAC-seq
14
ChIP-seq
4
DNase-seq
2
single cell RNA-seq
Assay category
58
Transcription
49
DNA accessibility
14
DNA binding
Target of assay
20
histone
20
histone modification
broad histone mark
7
control
6
narrow histone mark
1
RNA binding protein
1
transcription factor
Date released
60
February, 2021
35
February, 2023
12
October, 2019
5
May, 2019
3
July, 2019
2
August, 2021
2
February, 2020
2
June, 2019
Available data
88
bam
71
bigWig
60
bed narrowPeak
58
tsv
11
bigBed narrowPeak
tagAlign
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
Organism
121
Homo sapiens
Biosample type
60
cell line
59
tissue
2
primary cell
Organ
848
pancreas
677
liver
629
connective tissue
467
adipose tissue
466
epithelium
338
kidney
327
heart
180
vasculature
174
blood vessel
159
bone element
140
brain
121
artery
84
limb
69
blood
69
bodily fluid
63
musculature of body
61
eye
33
embryo
27
nerve
21
spleen
20
lung
18
ureter
16
skeleton
11
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
121
AMP
Genome assembly (visualization)
110
GRCh38
75
hg19
Lab
121
AMP-T2D consortium
assay_title!
Hi-C
files.file_type!
tagAlign
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
121 results
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total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
single cell RNA-seq
cell line
smooth muscle cell of the coronary artery
52
8
tissue
coronary artery
1
36
5
2
tibial artery
1
1
9
2
pulmonary artery
2
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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