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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
30
total RNA-seq
21
ATAC-seq
18
ChIP-seq
5
STARR-seq
Hi-C
1
whole genome sequencing assay
Assay category
30
Transcription
21
DNA accessibility
18
DNA binding
1
DNA sequencing
Target of assay
11
transcription factor
4
control
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
40
May, 2022
34
August, 2021
1
March, 2019
Available data
34
bed narrowPeak
34
bigWig
10
tsv
1
vcf
Organism
75
Homo sapiens
Biosample type
42
tissue
33
cell line
Organ
70
liver
2
kidney
2
pancreas
Project
75
AMP
Genome assembly (visualization)
35
hg19
1
GRCh38
Lab
3886
AMP-T2D consortium
343
Kyle Gaulton, UCSD
321
Klaus Kaestner, Upenn
141
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
35
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
assay_title!
Hi-C
BIOSAMPLE
ASSAY
75 results
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total RNA-seq
ATAC-seq
ChIP-seq
STARR-seq
whole genome sequencing assay
tissue
liver
20
20
islet of Langerhans
1
1
cell line
HepG2
9
18
2
1
HEK293T
2
Synthesized DNA
1
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