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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
120
ChIP-seq
77
ATAC-seq
41
WGBS
34
single cell RNA-seq
26
total RNA-seq
21
snATAC-seq
Assay category
120
DNA binding
98
DNA accessibility
60
Transcription
41
DNA methylation
Target of assay
92
histone
92
histone modification
58
broad histone mark
34
narrow histone mark
23
control
5
RNA binding protein
5
transcription factor
Date released
713
February, 2021
406
November, 2017
397
May, 2021
378
August, 2017
341
May, 2020
311
August, 2021
302
October, 2019
201
February, 2023
199
May, 2022
168
July, 2018
120
May, 2019
100
July, 2019
80
April, 2019
79
December, 2017
79
November, 2018
76
October, 2018
73
September, 2018
59
November, 2019
59
September, 2020
54
March, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
34
December, 2018
31
June, 2019
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
15
November, 2020
10
December, 2019
9
September, 2017
8
January, 2018
7
August, 2020
4
August, 2018
4
March, 2019
4
March, 2023
3
June, 2018
1
August, 2022
1
October, 2022
Available data
144
bam
135
bed narrowPeak
134
zippedFastqFolder
117
bigWig
97
bigBed narrowPeak
24
fastq
7
txt
bed bed3+
Organism
319
Homo sapiens
Biosample type
180
tissue
139
primary cell
Organ
106
pancreas
85
epithelium
50
blood vessel
50
vasculature
40
liver
28
brain
21
heart
8
musculature of body
7
limb
5
artery
5
kidney
Project
185
AMP
134
HPAP
Genome assembly (visualization)
135
hg19
96
GRCh38
Lab
134
Klaus Kaestner, Upenn
121
AMP-T2D consortium
40
Karen Mohlke, UNC
24
Kyle Gaulton, UCSD
Audit category:
3
inconsistent ontology term
assay_title!
Hi-C
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
319 results
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Clear Filters
ChIP-seq
ATAC-seq
WGBS
single cell RNA-seq
total RNA-seq
snATAC-seq
tissue
liver
20
20
islet of Langerhans
18
6
ascending aorta
16
thoracic aorta
16
temporal lobe
15
+ See 9 more…
primary cell
Langerhans cell
33
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
kidney epithelial cell
5
pancreatic acinar cell
4
See all biosamples
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