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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
276
ChIP-seq
247
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
30
DNase-seq
17
pCHi-C
Hi-C
9
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
436
Transcription
287
DNA accessibility
276
DNA binding
57
DNA methylation
Target of assay
236
histone
236
histone modification
122
broad histone mark
114
narrow histone mark
34
control
9
RNA binding protein
9
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
51
June, 2019
48
February, 2021
48
July, 2018
43
April, 2018
33
October, 2019
26
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
2
October, 2018
1
November, 2018
Available data
606
bigWig
605
bam
409
fastq
292
bed narrowPeak
270
tsv
153
zippedFastqFolder
106
bigBed narrowPeak
100
tagAlign
48
bed broadPeak
48
bigBed broadPeak
32
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
2
csv
1
bed bed3
1
tar
Organism
1073
Homo sapiens
Biosample type
2665
tissue
1073
primary cell
658
cell line
390
in vitro differentiated cells
10
stem cell
Organ
399
epithelium
343
pancreas
38
connective tissue
36
kidney
33
vasculature
27
blood vessel
20
vein
18
brain
14
musculature of body
13
heart
13
liver
8
blood
8
bodily fluid
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
548
AMP
321
HPAP
204
T1D
Genome assembly (visualization)
615
hg19
532
GRCh38
Lab
513
AMP-T2D consortium
321
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
Audit category:
54
inconsistent ontology term
27
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_title!
Hi-C
organ_slims!
eye
BIOSAMPLE
ASSAY
1073 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
35
12
31
Langerhans cell
85
48
pancreatic beta cell
13
21
23
12
16
CD8-positive, alpha-beta T cell
33
4
2
1
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