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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
27
ATAC-seq
5
total RNA-seq
4
DNase-seq
3
ChIP-seq
1
RRBS
Assay category
31
DNA accessibility
5
Transcription
3
DNA binding
1
DNA methylation
Target of assay
1
RNA binding protein
1
control
1
histone
1
histone modification
1
narrow histone mark
1
transcription factor
Date released
31
February, 2023
October, 2019
7
June, 2019
1
February, 2020
1
July, 2019
Available data
33
bed narrowPeak
7
bam
6
bigBed narrowPeak
6
bigWig
5
tsv
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
40
Homo sapiens
Biosample type
35
tissue
5
primary cell
Organ
920
pancreas
780
liver
679
connective tissue
490
adipose tissue
482
epithelium
343
heart
323
kidney
197
brain
185
vasculature
179
blood vessel
159
bone element
115
artery
90
musculature of body
69
blood
69
bodily fluid
49
limb
40
eye
37
embryo
25
spleen
20
lung
18
ureter
16
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
40
AMP
Genome assembly (visualization)
34
hg19
6
GRCh38
Lab
40
AMP-T2D consortium
assay_title!
Hi-C
month_released!
October, 2019
BIOSAMPLE
ASSAY
40 results
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ATAC-seq
total RNA-seq
DNase-seq
ChIP-seq
RRBS
tissue
retina
15
3
3
pigmented layer of retina
12
2
primary cell
retinal pigment epithelial cell
1
3
1
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