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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
Hi-C
6
total RNA-seq
5
RRBS
2
small RNA-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
Assay category
39
DNA binding
DNA accessibility
9
Transcription
6
DNA methylation
Target of assay
33
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
6
control
Date released
26
August, 2017
10
June, 2019
7
May, 2019
6
July, 2019
3
March, 2020
2
February, 2020
1
May, 2022
Available data
34
bigWig
27
bed narrowPeak
24
bam
15
tagAlign
14
bigBed narrowPeak
13
bed broadPeak
9
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
fastq
Organism
55
Homo sapiens
Biosample type
42
tissue
13
primary cell
Organ
764
pancreas
758
liver
649
connective tissue
483
adipose tissue
393
epithelium
273
heart
246
brain
190
kidney
173
vasculature
169
blood vessel
147
bone element
92
artery
74
limb
60
blood
60
bodily fluid
55
musculature of body
40
nerve
37
embryo
29
eye
23
spleen
17
vein
10
lung
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
55
AMP
Genome assembly (visualization)
36
hg19
20
GRCh38
Lab
55
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
assay_title!
Hi-C
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
55 results
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ChIP-seq
total RNA-seq
RRBS
small RNA-seq
WGBS
pCHi-C
single cell RNA-seq
tissue
skeletal muscle tissue
22
1
4
1
1
muscle of leg
7
1
psoas muscle
2
1
gastrocnemius medialis
1
left ventricle myocardium
1
primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
1
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