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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
33
DNase-seq
Hi-C
5
RRBS
1
ATAC-seq
1
WGBS
1
pCHi-C
1
snATAC-seq
Assay category
39
DNA binding
35
DNA accessibility
Transcription
6
DNA methylation
Target of assay
33
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
6
control
Date released
43
June, 2019
26
August, 2017
7
May, 2019
2
July, 2019
1
January, 2018
1
March, 2020
1
May, 2022
Available data
62
bigWig
60
bed narrowPeak
51
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
4
bed bedMethyl
4
bigBed bedMethyl
2
fastq
1
tsv
1
txt
Organism
81
Homo sapiens
Biosample type
69
tissue
12
primary cell
Organ
594
liver
458
pancreas
315
epithelium
259
brain
228
kidney
202
connective tissue
184
heart
164
vasculature
158
blood vessel
111
limb
97
bone element
90
adipose tissue
83
artery
81
musculature of body
69
blood
69
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
20
vein
18
ureter
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
81
AMP
Genome assembly (visualization)
65
hg19
47
GRCh38
Lab
81
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
1
audit script error
assay_title!
Hi-C
assay_slims!
Transcription
BIOSAMPLE
ASSAY
81 results
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ChIP-seq
DNase-seq
RRBS
ATAC-seq
WGBS
pCHi-C
snATAC-seq
tissue
skeletal muscle tissue
22
4
1
1
muscle of leg
7
13
1
muscle of arm
17
forelimb muscle
1
hindlimb muscle
1
+ See 1 more…
primary cell
skeletal muscle satellite cell
8
skeletal muscle cell
2
1
1
See all biosamples
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