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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
33
DNase-seq
Hi-C
6
total RNA-seq
5
RRBS
2
small RNA-seq
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
39
DNA binding
34
DNA accessibility
9
Transcription
6
DNA methylation
Target of assay
33
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
6
control
Date released
43
June, 2019
26
August, 2017
7
May, 2019
6
July, 2019
3
March, 2020
2
February, 2020
2
May, 2022
Available data
67
bigWig
60
bed narrowPeak
57
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
9
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
fastq
1
txt
Organism
89
Homo sapiens
Biosample type
75
tissue
14
primary cell
Organ
785
pancreas
764
liver
658
connective tissue
485
adipose tissue
413
epithelium
303
heart
279
brain
278
kidney
185
vasculature
179
blood vessel
147
bone element
110
limb
96
artery
89
musculature of body
68
blood
68
bodily fluid
42
nerve
37
embryo
33
eye
24
spleen
20
lung
20
vein
18
ureter
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
89
AMP
Genome assembly (visualization)
70
hg19
53
GRCh38
Lab
89
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
1
audit script error
assay_title!
Hi-C
ATAC-seq
BIOSAMPLE
ASSAY
89 results
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ChIP-seq
DNase-seq
total RNA-seq
RRBS
small RNA-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
1
4
1
1
1
muscle of leg
7
13
1
muscle of arm
17
psoas muscle
2
1
forelimb muscle
1
+ See 3 more…
primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
1
1
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