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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
DNase-seq
32
ChIP-seq
Hi-C
6
total RNA-seq
5
RRBS
2
small RNA-seq
1
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
35
DNA accessibility
32
DNA binding
9
Transcription
6
DNA methylation
Target of assay
27
histone
27
histone modification
16
broad histone mark
11
narrow histone mark
5
control
Date released
43
June, 2019
26
August, 2017
May, 2019
6
July, 2019
3
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
Available data
62
bigWig
54
bed narrowPeak
50
bam
46
bed broadPeak
41
bigBed narrowPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
9
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
fastq
1
txt
Organism
83
Homo sapiens
Biosample type
69
tissue
14
primary cell
Organ
935
pancreas
787
liver
683
connective tissue
511
epithelium
491
adipose tissue
348
kidney
329
heart
255
brain
181
vasculature
175
blood vessel
159
bone element
136
artery
111
limb
83
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
20
lung
20
vein
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
83
AMP
Genome assembly (visualization)
65
hg19
48
GRCh38
Lab
83
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
1
audit script error
assay_title!
Hi-C
month_released!
May, 2019
BIOSAMPLE
ASSAY
83 results
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DNase-seq
ChIP-seq
total RNA-seq
RRBS
small RNA-seq
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
1
4
1
1
1
1
muscle of arm
17
muscle of leg
13
1
psoas muscle
2
1
forelimb muscle
1
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primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
1
2
1
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