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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
279
ChIP-seq
159
total RNA-seq
5
DNase-seq
3
ATAC-seq
3
small RNA-seq
1
WGBS
Assay category
279
DNA binding
162
Transcription
8
DNA accessibility
1
DNA methylation
Target of assay
286
transcription factor
recombinant protein
70
histone modification
69
histone
51
RNA binding protein
41
narrow histone mark
28
broad histone mark
21
chromatin remodeller
2
other context
2
other post-translational modification
1
control
Date released
162
May, 2020
151
November, 2017
50
December, 2017
37
November, 2018
19
August, 2017
7
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
3
August, 2021
2
June, 2019
1
February, 2021
1
March, 2020
Available data
450
bam
447
bigWig
286
bed narrowPeak
262
fastq
245
bigBed narrowPeak
162
tsv
49
bed broadPeak
49
bigBed broadPeak
31
tagAlign
11
bed bed3+
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
Organism
450
Homo sapiens
Biosample type
238
tissue
187
cell line
14
in vitro differentiated cells
11
primary cell
Organ
634
pancreas
566
connective tissue
450
liver
424
adipose tissue
294
epithelium
266
heart
217
brain
198
kidney
191
vasculature
187
blood vessel
128
artery
96
limb
66
bone element
54
blood
54
bodily fluid
53
musculature of body
31
nerve
29
embryo
18
ureter
16
spleen
12
vein
8
skeleton
6
eye
1
pericardium
1
pituitary gland
Project
450
AMP
Genome assembly (visualization)
544
hg19
450
GRCh38
Lab
450
AMP-T2D consortium
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
5
missing controlled_by
Audit category:
22
inconsistent control read length
6
inconsistent control run_type
assay_title!
Hi-C
target.investigated_as!
recombinant protein
BIOSAMPLE
ASSAY
450 results
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ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
small RNA-seq
WGBS
tissue
liver
75
147
2
1
right lobe of liver
7
2
1
1
2
cell line
HepG2
180
5
1
1
in vitro differentiated cells
hepatocyte
14
primary cell
hepatocyte
3
5
1
Liver fetal (hepatocyte)
1
hepatic stellate cell
1
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