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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1031
total RNA-seq
175
single cell RNA-seq
16
small RNA-seq
Assay category
1222
Transcription
907
DNA binding
468
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Date released
445
February, 2021
156
August, 2021
143
May, 2020
120
July, 2018
89
August, 2017
47
July, 2019
47
September, 2023
39
May, 2021
27
May, 2022
25
February, 2020
22
October, 2019
19
November, 2019
14
February, 2023
9
April, 2020
9
March, 2020
6
April, 2018
4
May, 2023
1
December, 2019
Available data
1045
tsv
923
bam
917
bigWig
103
fastq
67
txt
1
csv
Organism
1222
Homo sapiens
Biosample type
1222
tissue
436
primary cell
136
in vitro differentiated cells
115
cell line
2
stem cell
Organ
457
connective tissue
399
adipose tissue
291
pancreas
174
liver
110
kidney
109
heart
62
bone element
21
brain
19
eye
13
blood vessel
13
vasculature
9
lung
7
limb
7
musculature of body
5
nerve
4
artery
4
skeleton
2
epithelium
1
spinal cord
Project
1159
AMP
47
KPMP
9
LungMap
7
T1D
Genome assembly (visualization)
918
GRCh38
918
hg19
Lab
1073
AMP-T2D consortium
60
Katalin Susztak, Upenn
47
KPMP
20
Karen Mohlke, UNC
12
Kyle Gaulton, UCSD
9
Xin Sun, UCSD
1
Bing Ren, UCSD
Audit category:
audit script error
1
inconsistent ontology term
assay_title!
HiChIP
audit.ERROR.category!
audit script error
BIOSAMPLE
ASSAY
1222 results
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total RNA-seq
single cell RNA-seq
small RNA-seq
tissue
adipose tissue
382
islet of Langerhans
292
6
liver
167
1
1
kidney
49
59
bone tissue
58
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