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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
493
total RNA-seq
158
ChIP-seq
53
ATAC-seq
13
DNase-seq
9
pCHi-C
6
WGBS
4
single cell RNA-seq
3
small RNA-seq
2
Capture-C
2
RRBS
1
Hi-C
1
RNA microarray
Assay category
158
DNA binding
Target of assay
81
histone
81
histone modification
44
broad histone mark
41
transcription factor
36
control
36
narrow histone mark
11
RNA binding protein
2
chromatin remodeller
Date released
117
August, 2017
23
October, 2018
15
June, 2019
3
October, 2019
Available data
105
bam
90
fastq
77
bigWig
60
bed narrowPeak
22
tagAlign
17
bigBed narrowPeak
11
bed bed3+
1
bed broadPeak
Organism
158
Homo sapiens
Biosample type
76
tissue
67
in vitro differentiated cells
15
primary cell
Organ
552
liver
218
brain
218
pancreas
153
connective tissue
134
heart
129
epithelium
102
vasculature
99
blood vessel
73
adipose tissue
66
limb
60
blood
60
bodily fluid
52
kidney
39
musculature of body
35
nerve
34
artery
22
embryo
20
spleen
17
vein
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
158
AMP
Genome assembly (visualization)
78
hg19
77
GRCh38
Lab
158
AMP-T2D consortium
Audit category:
11
inconsistent ontology term
Audit category:
17
missing controlled_by
Audit category:
6
inconsistent control read length
assay_title!
HiChIP
BIOSAMPLE
ASSAY
158 results
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Clear Filters
ChIP-seq
tissue
subcutaneous abdominal adipose tissue
36
subcutaneous adipose tissue
12
white adipose tissue
12
omental fat pad
11
islet of Langerhans
3
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in vitro differentiated cells
adipocyte
67
primary cell
mesenchymal stem cell
7
cardiac fibroblast
5
retinal pigment epithelial cell
3
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