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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
40
ChIP-seq
35
ATAC-seq
3
pCHi-C
3
total RNA-seq
2
WGBS
Assay category
96
Transcription
40
DNA binding
35
DNA accessibility
2
DNA methylation
Target of assay
35
histone
35
histone modification
20
broad histone mark
15
narrow histone mark
5
RNA binding protein
5
transcription factor
Date released
92
August, 2021
40
May, 2024
36
February, 2023
3
February, 2020
3
March, 2020
2
July, 2019
Available data
98
tsv
78
bed narrowPeak
49
bigWig
bam
6
bed bedMethyl
6
bigBed bedMethyl
3
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
3
bigBed narrowPeak
2
tagAlign
Organism
176
Homo sapiens
Biosample type
176
tissue
Organ
234
pancreas
205
kidney
179
epithelium
176
heart
89
bone element
70
liver
65
connective tissue
45
blood vessel
45
vasculature
44
adipose tissue
39
artery
34
brain
26
eye
20
lung
19
musculature of body
8
blood
8
bodily fluid
8
limb
5
gonad
5
ovary
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
176
AMP
Genome assembly (visualization)
75
GRCh38
hg19
Lab
136
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
assay_title!
HiChIP
assembly!
hg19
files.file_type!
bam
BIOSAMPLE
ASSAY
176 results
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single cell RNA-seq
ChIP-seq
ATAC-seq
pCHi-C
total RNA-seq
WGBS
tissue
left cardiac atrium
18
40
coronary artery
35
1
heart left ventricle
18
1
2
right cardiac atrium
18
1
heart right ventricle
17
1
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