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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
43
ChIP-seq
12
total RNA-seq
3
ATAC-seq
2
pCHi-C
Assay category
43
DNA binding
12
Transcription
3
DNA accessibility
Target of assay
25
control
18
histone
18
histone modification
9
broad histone mark
9
narrow histone mark
Date released
24
November, 2017
12
February, 2020
10
October, 2017
8
October, 2019
3
May, 2019
2
March, 2020
1
July, 2019
Available data
88
bam
75
tagAlign
63
bigWig
bed narrowPeak
62
bigBed narrowPeak
14
tsv
10
bed bed3+
10
bed broadPeak
10
bigBed broadPeak
4
fastq
Organism
60
Homo sapiens
Biosample type
60
tissue
Organ
286
pancreas
207
epithelium
162
liver
154
kidney
127
heart
94
connective tissue
89
bone element
65
adipose tissue
60
brain
35
blood vessel
35
vasculature
27
eye
26
limb
23
musculature of body
20
lung
14
blood
14
bodily fluid
13
artery
12
nerve
11
spleen
8
embryo
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
60
AMP
Genome assembly (visualization)
hg19
16
GRCh38
Lab
60
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
1
missing controlled_by
assay_title!
HiChIP
assembly!
hg19
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
60 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
tissue
brain
9
cingulate gyrus
7
layer of hippocampus
6
substantia nigra
4
1
caudate nucleus
3
1
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