Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
25
ChIP-seq
7
single cell RNA-seq
6
ATAC-seq
4
total RNA-seq
3
DNase-seq
Assay category
25
DNA binding
11
Transcription
9
DNA accessibility
Target of assay
17
histone
17
histone modification
9
narrow histone mark
8
broad histone mark
5
control
3
RNA binding protein
3
transcription factor
Date released
25
June, 2019
8
May, 2020
6
July, 2018
3
May, 2019
2
October, 2019
1
June, 2018
Available data
45
bam
38
bigWig
25
bed narrowPeak
23
bigBed narrowPeak
17
tsv
7
fastq
3
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
Organism
45
Homo sapiens
Biosample type
101
in vitro differentiated cells
62
cell line
45
primary cell
4
tissue
Organ
12
connective tissue
9
epithelium
8
musculature of body
7
kidney
5
heart
5
pancreas
1
liver
1
vasculature
Project
41
AMP
4
T1D
Genome assembly (visualization)
40
hg19
36
GRCh38
Lab
41
AMP-T2D consortium
4
Kyle Gaulton, UCSD
Audit category:
45
inconsistent ontology term
assay_title!
HiChIP
BIOSAMPLE
ASSAY
45 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
single cell RNA-seq
ATAC-seq
total RNA-seq
DNase-seq
primary cell
skeletal muscle satellite cell
8
mesenchymal stem cell
7
cardiac fibroblast
4
1
central memory CD8-positive, alpha-beta T cell
2
2
epithelial cell of proximal tubule
3
1
+ See 9 more…
See all biosamples
Download