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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
25
ChIP-seq
4
RRBS
4
total RNA-seq
2
Hi-C
1
ATAC-seq
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
25
DNA binding
5
Transcription
4
DNA methylation
2
3D chromatin structure
2
DNA accessibility
Target of assay
19
histone
19
histone modification
12
broad histone mark
7
narrow histone mark
6
control
Date released
26
August, 2017
July, 2019
5
March, 2020
2
February, 2020
2
June, 2019
2
May, 2022
1
January, 2018
1
May, 2019
Available data
63
bigWig
60
bed narrowPeak
52
bam
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
5
tsv
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
fastq
2
hic
1
txt
Organism
39
Homo sapiens
Biosample type
37
tissue
2
primary cell
Organ
849
pancreas
638
connective tissue
469
adipose tissue
435
epithelium
423
liver
274
heart
240
kidney
159
bone element
142
brain
141
vasculature
140
blood vessel
113
artery
54
eye
39
musculature of body
37
embryo
33
limb
20
lung
17
nerve
16
skeleton
15
blood
15
bodily fluid
12
spleen
9
vein
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
39
AMP
Genome assembly (visualization)
21
hg19
2
GRCh38
Lab
39
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
assay_title!
HiChIP
files.file_type!
bigBed narrowPeak
month_released!
July, 2019
BIOSAMPLE
ASSAY
39 results
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ChIP-seq
RRBS
total RNA-seq
Hi-C
ATAC-seq
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
4
1
1
1
psoas muscle
2
2
1
gastrocnemius medialis
1
left ventricle myocardium
1
muscle of leg
1
primary cell
skeletal muscle cell
1
skeletal muscle satellite cell
1
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