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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
25
ChIP-seq
5
RRBS
4
Hi-C
4
total RNA-seq
2
small RNA-seq
1
ATAC-seq
1
WGBS
1
single cell RNA-seq
1
snATAC-seq
Assay category
25
DNA binding
7
Transcription
6
DNA methylation
4
3D chromatin structure
2
DNA accessibility
Target of assay
19
histone
19
histone modification
12
broad histone mark
7
narrow histone mark
6
control
Date released
26
August, 2017
10
July, 2019
March, 2020
2
February, 2020
2
June, 2019
2
May, 2022
1
January, 2018
1
May, 2019
Available data
66
bigWig
60
bed narrowPeak
55
bam
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
6
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
fastq
1
txt
Organism
44
Homo sapiens
Biosample type
39
tissue
5
primary cell
Organ
841
pancreas
654
connective tissue
480
adipose tissue
442
epithelium
430
liver
292
heart
248
kidney
159
bone element
157
brain
149
vasculature
147
blood vessel
116
artery
55
eye
44
musculature of body
38
limb
37
embryo
19
lung
17
nerve
16
skeleton
15
blood
15
bodily fluid
11
spleen
8
vein
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
bone marrow
1
lymph node
1
skin of body
1
spinal cord
1
thymus
Project
44
AMP
Genome assembly (visualization)
22
hg19
5
GRCh38
Lab
44
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
assay_title!
HiChIP
files.file_type!
bigBed narrowPeak
month_released!
March, 2020
BIOSAMPLE
ASSAY
44 results
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ChIP-seq
RRBS
Hi-C
total RNA-seq
small RNA-seq
ATAC-seq
WGBS
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
4
1
1
1
1
1
gastrocnemius medialis
4
1
muscle of leg
1
1
left ventricle myocardium
1
primary cell
skeletal muscle satellite cell
1
1
1
skeletal muscle cell
1
1
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