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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
255
ChIP-seq
186
ATAC-seq
97
total RNA-seq
87
single cell RNA-seq
56
snATAC-seq
41
WGBS
27
DNase-seq
17
pCHi-C
10
RRBS
9
Hi-C
1
DNAme array
Assay category
269
DNA accessibility
255
DNA binding
184
Transcription
52
DNA methylation
9
3D chromatin structure
Target of assay
216
histone
216
histone modification
110
broad histone mark
106
narrow histone mark
29
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
154
May, 2021
134
May, 2022
102
May, 2020
76
February, 2023
59
August, 2017
59
September, 2020
55
June, 2019
47
September, 2018
41
February, 2021
October, 2019
13
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
5
May, 2019
5
September, 2017
4
August, 2021
3
October, 2022
2
November, 2020
1
March, 2020
1
March, 2023
1
November, 2018
Available data
590
bigWig
578
bam
409
fastq
274
bed narrowPeak
tsv
153
zippedFastqFolder
100
tagAlign
96
bigBed narrowPeak
45
bed broadPeak
45
bigBed broadPeak
35
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
5
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
Organism
786
Homo sapiens
Biosample type
1467
tissue
786
primary cell
515
cell line
257
in vitro differentiated cells
6
stem cell
Organ
259
epithelium
238
pancreas
24
connective tissue
21
kidney
18
brain
14
vasculature
12
musculature of body
9
heart
8
blood
8
blood vessel
8
bodily fluid
8
liver
5
eye
1
bone element
1
bone marrow
1
vein
Project
359
AMP
318
HPAP
108
T1D
1
ITG
Genome assembly (visualization)
352
hg19
264
GRCh38
Lab
324
AMP-T2D consortium
318
Klaus Kaestner, Upenn
143
Kyle Gaulton, UCSD
1
ITG
Audit category:
35
inconsistent ontology term
30
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_title!
HiChIP
files.file_type!
tsv
month_released!
October, 2019
BIOSAMPLE
ASSAY
786 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
RRBS
Hi-C
DNAme array
primary cell
Langerhans cell
85
48
pancreatic alpha cell
13
35
42
25
1
monocyte
85
15
1
1
1
pancreatic beta cell
13
23
11
16
1
exocrine cell
39
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