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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
63
ChIP-seq
9
DNase-seq
7
WGBS
5
GRO-seq
3
ATAC-seq
1
FAIRE-seq
Assay category
63
DNA binding
13
DNA accessibility
7
DNA methylation
Target of assay
63
transcription factor
21
RNA binding protein
15
recombinant protein
7
chromatin remodeller
3
other context
3
other post-translational modification
Date released
551
February, 2021
334
November, 2017
303
May, 2021
272
August, 2017
260
May, 2020
210
June, 2019
207
October, 2019
164
July, 2018
97
May, 2019
85
July, 2019
80
November, 2018
72
December, 2017
72
September, 2018
65
April, 2019
49
April, 2018
47
August, 2021
47
October, 2018
40
May, 2024
31
February, 2018
31
November, 2019
30
December, 2018
26
January, 2019
20
March, 2020
20
May, 2022
14
October, 2017
8
January, 2018
7
August, 2020
5
December, 2019
5
November, 2020
5
September, 2017
3
August, 2018
3
February, 2023
3
June, 2018
3
September, 2020
Available data
93
fastq
88
bigWig
87
bam
73
bed narrowPeak
73
bigBed narrowPeak
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
1
csv
Organism
88
Homo sapiens
Biosample type
58
cell line
25
tissue
4
in vitro differentiated cells
1
stem cell
Organ
52
liver
13
blood
13
bodily fluid
7
pancreas
6
spleen
2
adipose tissue
2
brain
2
connective tissue
1
embryo
1
musculature of body
Project
88
AMP
Genome assembly (visualization)
79
GRCh38
74
hg19
5
hg18
Lab
88
AMP-T2D consortium
Audit category:
2
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
assay_title!
HiChIP
BIOSAMPLE
ASSAY
88 results
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Clear Filters
ChIP-seq
DNase-seq
WGBS
GRO-seq
ATAC-seq
FAIRE-seq
cell line
HepG2
44
1
GM12878
12
1
tissue
liver
4
2
spleen
3
1
2
body of pancreas
2
2
pancreas
2
1
brain
2
+ See 4 more…
in vitro differentiated cells
Posterior foregut
1
definitive endodermal cell
1
pancreatic endoderm
1
primitive gut cell
1
stem cell
hESC
1
See all biosamples
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