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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
69
ChIP-seq
9
DNase-seq
8
ATAC-seq
7
WGBS
1
FAIRE-seq
Assay category
69
DNA binding
18
DNA accessibility
7
DNA methylation
Target of assay
63
transcription factor
21
RNA binding protein
15
recombinant protein
7
chromatin remodeller
6
histone
6
histone modification
5
broad histone mark
3
other context
3
other post-translational modification
1
narrow histone mark
Date released
551
February, 2021
334
November, 2017
303
May, 2021
272
August, 2017
260
May, 2020
210
June, 2019
207
October, 2019
164
July, 2018
97
May, 2019
85
July, 2019
80
November, 2018
72
December, 2017
72
September, 2018
65
April, 2019
49
April, 2018
47
August, 2021
47
October, 2018
40
May, 2024
31
February, 2018
31
November, 2019
30
December, 2018
26
January, 2019
20
March, 2020
20
May, 2022
14
October, 2017
8
January, 2018
7
August, 2020
5
December, 2019
5
November, 2020
5
September, 2017
3
August, 2018
3
February, 2023
3
June, 2018
3
September, 2020
Available data
105
fastq
102
bam
94
bigWig
85
bed narrowPeak
79
bigBed narrowPeak
14
tagAlign
13
bed broadPeak
9
bed bed3+
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
1
csv
Organism
94
Homo sapiens
Biosample type
57
cell line
37
tissue
Organ
52
liver
12
blood
12
bodily fluid
12
pancreas
9
brain
7
spleen
2
adipose tissue
2
connective tissue
Project
94
AMP
Genome assembly (visualization)
93
GRCh38
84
hg19
Lab
93
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
5
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
assay_title!
HiChIP
BIOSAMPLE
ASSAY
94 results
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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
WGBS
FAIRE-seq
cell line
HepG2
44
1
GM12878
12
tissue
body of pancreas
2
4
2
brain
6
2
spleen
3
1
1
2
liver
4
2
pancreas
2
1
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