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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
98
total RNA-seq
36
single cell RNA-seq
27
snATAC-seq
19
ATAC-seq
8
WGBS
4
RRBS
1
Hi-C
1
pCHi-C
Assay category
134
Transcription
46
DNA accessibility
12
DNA methylation
1
3D chromatin structure
Date released
76
February, 2023
45
February, 2021
38
September, 2020
24
May, 2022
6
August, 2017
1
August, 2018
1
December, 2018
1
March, 2019
1
November, 2018
1
September, 2018
Available data
1814
bam
bigWig
1600
tsv
501
fastq
492
bed narrowPeak
241
bigBed narrowPeak
220
bed bed3+
208
bed broadPeak
206
bigBed broadPeak
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
3
cool
2
ibed
1
bedpe
1
tar
1
vcf
Organism
194
Homo sapiens
Biosample type
162
primary cell
30
tissue
1
cell line
1
in vitro differentiated cells
Organ
84
pancreas
59
epithelium
3
liver
2
adipose tissue
2
connective tissue
2
musculature of body
Project
159
HPAP
35
AMP
Genome assembly (visualization)
22
hg19
Lab
159
Klaus Kaestner, Upenn
24
Kyle Gaulton, UCSD
10
AMP-T2D consortium
1
Mark McCarthy, Oxford
Audit category:
27
audit script error
assay_title!
HiChIP
ChIP-seq
files.file_type!
bigWig
BIOSAMPLE
ASSAY
194 results
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total RNA-seq
single cell RNA-seq
snATAC-seq
ATAC-seq
WGBS
RRBS
Hi-C
pCHi-C
primary cell
Langerhans cell
34
27
pancreatic alpha cell
42
6
exocrine cell
39
pancreatic beta cell
11
pancreatic cell
2
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tissue
islet of Langerhans
6
19
liver
1
1
skeletal muscle tissue
2
adipose tissue
1
cell line
HepG2
1
in vitro differentiated cells
white fat cell
1
See all biosamples
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