Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
59
single cell RNA-seq
59
total RNA-seq
27
snATAC-seq
9
DNase-seq
7
WGBS
5
ATAC-seq
5
GRO-seq
4
RRBS
1
Hi-C
1
pCHi-C
Assay category
118
Transcription
41
DNA accessibility
11
DNA methylation
1
3D chromatin structure
Date released
39
February, 2021
39
February, 2023
22
September, 2020
15
February, 2018
12
August, 2017
11
July, 2018
11
November, 2018
10
April, 2018
5
January, 2018
5
January, 2019
3
October, 2017
2
June, 2018
1
August, 2018
1
December, 2018
1
September, 2018
Available data
1323
bam
1317
bigWig
1183
tsv
418
bed narrowPeak
212
bed bed3+
209
bigBed narrowPeak
199
bed broadPeak
199
bigBed broadPeak
177
fastq
155
txt
73
zippedFastqFolder
64
xls
30
bed bedMethyl
30
bigBed bedMethyl
16
bedpe bed3+
16
hic
12
bed bed3
8
csv
7
bed bedgraph
4
hdf5
2
ibed
1
tar
1
vcf
Organism
177
Homo sapiens
Biosample type
127
primary cell
21
in vitro differentiated cells
21
tissue
7
cell line
1
stem cell
Organ
pancreas
185
epithelium
13
liver
11
connective tissue
7
adipose tissue
5
embryo
4
spleen
3
brain
2
musculature of body
Project
100
HPAP
77
AMP
Genome assembly (visualization)
61
GRCh38
60
hg19
5
hg18
Lab
100
Klaus Kaestner, Upenn
77
AMP-T2D consortium
Audit category:
27
audit script error
2
inconsistent ontology term
assay_title!
HiChIP
ChIP-seq
organ_slims!
pancreas
BIOSAMPLE
ASSAY
177 results
search-icon
table-tab-icon
Clear Filters
single cell RNA-seq
total RNA-seq
snATAC-seq
DNase-seq
WGBS
ATAC-seq
GRO-seq
RRBS
Hi-C
pCHi-C
primary cell
Langerhans cell
34
27
exocrine cell
39
pancreatic cell
9
mesenchymal cell
6
endothelial cell
2
+ See 5 more…
in vitro differentiated cells
pancreatic endoderm
4
1
definitive endodermal cell
2
1
primitive gut cell
2
1
embryonic stem cell
2
endocrine cell
2
+ See 5 more…
tissue
liver
2
1
1
spleen
1
2
1
adipose tissue
3
brain
2
omental fat pad
1
1
+ See 4 more…
cell line
HepG2
5
1
1
stem cell
hESC
1
See all biosamples
Download