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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
16
Hi-C
Assay category
16
3D chromatin structure
Date released
9
March, 2020
3
October, 2019
1
August, 2021
1
March, 2019
1
March, 2023
1
November, 2019
Available data
2964
bam
2767
bigWig
1506
bed narrowPeak
1428
tsv
1101
fastq
879
bigBed narrowPeak
391
tagAlign
232
bed broadPeak
195
bigBed broadPeak
184
bed bed3+
99
txt
73
zippedFastqFolder
29
bed bedMethyl
29
bigBed bedMethyl
18
bedpe bed3+
16
hic
12
bed bed3
7
bed bedgraph
3
csv
3
hdf5
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
16
Homo sapiens
Biosample type
10
tissue
4
in vitro differentiated cells
1
cell line
1
primary cell
Organ
7
pancreas
epithelium
3
blood vessel
3
heart
3
vasculature
2
liver
2
musculature of body
2
vein
kidney
Project
15
AMP
1
ITG
Genome assembly (visualization)
15
hg19
1
GRCh38
Lab
13
AMP-T2D consortium
2
Bing Ren, UCSD
1
ITG
Audit category:
4
inconsistent ontology term
assay_title!
HiChIP
organ_slims!
kidney
epithelium
BIOSAMPLE
ASSAY
16 results
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Hi-C
tissue
islet of Langerhans
2
psoas muscle
2
aorta
1
heart
1
heart left ventricle
1
+ See 3 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
cardiac precursors (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
cell line
HepG2
1
primary cell
chondrocytes
1
See all biosamples
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