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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
29
ChIP-seq
6
Hi-C
5
RRBS
1
ATAC-seq
1
WGBS
1
single cell RNA-seq
1
snATAC-seq
Assay category
29
DNA binding
6
3D chromatin structure
6
DNA methylation
2
DNA accessibility
1
Transcription
Target of assay
25
histone
25
histone modification
16
broad histone mark
9
narrow histone mark
4
control
Date released
June, 2019
26
August, 2017
7
May, 2019
6
July, 2019
2
March, 2020
2
May, 2022
1
January, 2018
Available data
27
bigWig
19
bed narrowPeak
15
tagAlign
14
bam
13
bed broadPeak
tsv
6
bigBed narrowPeak
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
bed bed3+
1
txt
Organism
44
Homo sapiens
Biosample type
43
tissue
1
primary cell
Organ
615
liver
525
pancreas
348
epithelium
249
kidney
230
brain
190
heart
188
connective tissue
161
vasculature
157
blood vessel
101
bone element
89
adipose tissue
83
limb
81
artery
69
blood
69
bodily fluid
49
eye
44
musculature of body
38
nerve
24
spleen
23
embryo
22
vein
19
lung
16
skeleton
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
44
AMP
Genome assembly (visualization)
26
hg19
6
GRCh38
Lab
44
AMP-T2D consortium
Audit category:
1
audit script error
assay_title!
HiChIP
month_released!
June, 2019
files.file_type!
tsv
BIOSAMPLE
ASSAY
44 results
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ChIP-seq
Hi-C
RRBS
ATAC-seq
WGBS
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
4
1
1
1
muscle of leg
7
1
gastrocnemius medialis
4
psoas muscle
2
primary cell
skeletal muscle cell
1
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