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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
238
ChIP-seq
17
total RNA-seq
5
ATAC-seq
4
small RNA-seq
3
DNase-seq
3
Hi-C
3
pCHi-C
3
single cell RNA-seq
2
RRBS
2
WGBS
1
FAIRE-seq
Assay category
238
DNA binding
24
Transcription
9
DNA accessibility
4
DNA methylation
3
3D chromatin structure
Target of assay
193
histone
193
histone modification
119
narrow histone mark
74
broad histone mark
39
control
9
transcription factor
3
RNA binding protein
3
other context
3
other post-translational modification
Date released
91
November, 2017
86
October, 2019
June, 2019
28
May, 2019
18
July, 2019
17
October, 2017
12
February, 2020
11
November, 2018
7
December, 2018
7
January, 2019
3
March, 2020
1
February, 2023
Available data
237
bam
208
bigWig
187
bed narrowPeak
118
tagAlign
110
bigBed narrowPeak
45
fastq
27
tsv
18
bed broadPeak
9
bigBed broadPeak
6
bed bed3+
4
bed bedMethyl
4
bigBed bedMethyl
3
hdf5
1
bed bed3
1
tagAlign bed3+
Organism
281
Homo sapiens
Biosample type
265
tissue
16
primary cell
Organ
942
pancreas
789
liver
666
connective tissue
504
epithelium
490
adipose tissue
358
heart
273
kidney
256
brain
229
vasculature
225
blood vessel
159
bone element
139
artery
90
limb
69
blood
69
bodily fluid
54
eye
53
musculature of body
43
nerve
37
embryo
25
spleen
22
vein
20
lung
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
281
AMP
Genome assembly (visualization)
203
GRCh38
158
hg19
Lab
281
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
assay_title!
HiChIP
month_released!
June, 2019
BIOSAMPLE
ASSAY
281 results
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ChIP-seq
total RNA-seq
ATAC-seq
small RNA-seq
DNase-seq
Hi-C
pCHi-C
single cell RNA-seq
RRBS
WGBS
FAIRE-seq
tissue
brain
20
1
1
2
1
spleen
20
1
1
1
2
layer of hippocampus
23
substantia nigra
16
1
temporal lobe
15
1
1
+ See 73 more…
primary cell
astrocyte of the cerebellum
3
1
brain microvascular endothelial cell
3
1
choroid plexus epithelial cell
3
1
cerebellar granule cell
2
Purkinje cell
1
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