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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
total RNA-seq
19
ChIP-seq
12
ATAC-seq
1
CRISPR genome editing followed by sgRNA sequencing
Assay category
39
Transcription
19
DNA binding
12
DNA accessibility
Target of assay
14
histone
14
histone modification
7
broad histone mark
7
narrow histone mark
3
control
2
RNA binding protein
2
transcription factor
1
chromatin remodeller
Date released
80
May, 2022
61
September, 2018
52
February, 2023
35
October, 2019
33
April, 2018
33
July, 2018
32
February, 2021
29
August, 2017
26
May, 2021
20
June, 2019
19
December, 2017
19
September, 2020
16
November, 2019
13
July, 2019
7
August, 2020
6
August, 2021
6
December, 2019
6
March, 2020
6
November, 2017
6
November, 2020
5
May, 2019
5
September, 2017
3
August, 2018
3
October, 2022
2
October, 2018
1
June, 2018
Available data
56
fastq
28
bed narrowPeak
19
bam
16
bigWig
14
bigBed narrowPeak
2
tsv
Organism
70
Homo sapiens
Biosample type
37
primary cell
19
in vitro differentiated cells
14
tissue
1
cell line
Organ
71
epithelium
63
liver
56
pancreas
36
heart
35
artery
35
blood vessel
35
vasculature
31
eye
14
connective tissue
13
embryo
8
bone element
8
skeleton
1
adipose tissue
1
brain
Project
37
HPAP
34
AMP
Genome assembly (visualization)
28
hg19
16
GRCh38
Lab
37
Klaus Kaestner, Upenn
34
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
1
inconsistent control read length
assay_title!
HiChIP
BIOSAMPLE
ASSAY
71 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
CRISPR genome editing followed by sgRNA sequencing
primary cell
pancreatic alpha cell
27
pancreatic beta cell
10
in vitro differentiated cells
hepatocyte
15
Hepatic endoderm
4
tissue
pigmented layer of retina
2
12
cell line
EndoC_BH1
1
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