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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
51
ChIP-seq
8
ATAC-seq
7
total RNA-seq
4
DNase-seq
4
Hi-C
1
WGBS
Assay category
51
DNA binding
12
DNA accessibility
7
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
49
histone
49
histone modification
34
broad histone mark
17
control
narrow histone mark
Date released
56
October, 2019
June, 2019
6
February, 2021
5
July, 2019
5
May, 2019
3
February, 2020
Available data
68
bam
46
bed narrowPeak
45
bigWig
38
bigBed narrowPeak
7
tsv
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
75
Homo sapiens
Biosample type
75
tissue
Organ
869
pancreas
729
liver
637
connective tissue
478
adipose tissue
457
epithelium
320
heart
259
kidney
203
vasculature
200
blood vessel
159
bone element
139
brain
133
artery
75
limb
68
blood
68
bodily fluid
52
eye
44
musculature of body
35
nerve
29
embryo
23
spleen
20
lung
16
skeleton
16
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
75
AMP
Genome assembly (visualization)
51
GRCh38
50
hg19
Lab
75
AMP-T2D consortium
assay_title!
HiChIP
month_released!
June, 2019
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
75 results
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ChIP-seq
ATAC-seq
total RNA-seq
DNase-seq
Hi-C
WGBS
tissue
tibial nerve
27
1
5
2
tibial artery
19
1
1
2
muscle of leg
5
1
gastrocnemius medialis
1
4
distal epiphysis of femur
1
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